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Saint Louis University

Computer Science 1020
Introduction to Computer Science: Bioinformatics

Michael Goldwasser

Spring 2019

Computer Science Department

Please make sure you understand the policy towards Academic Integrity.


Homework Assignments

Assignment Topic Due Collaboration Policy Solution
hw01 DNA Profiling 11:00am, Friday, 1 February 2019 individual
hw02 Inverted Repeats 11:59pm, Friday, 8 February 2019 pair
hw03 Pairwise Global Alignment 11:00am, Monday, 18 February 2019 individual
hw04 Smith-Waterman Algorithm 11:59pm, Monday, 25 February 2019 pair
hw05 Phylogeny 11:59pm, Wednesday, March 27, 2019 individual
hw06 Clustering Algorithms 11:59pm, Wednesday, April 3, 2019 individual
hw07 Sequence Assembly Algorithms 11:50am, Monday, 15 April 2019 individual

Lab Assignments

Assignment Topic Due Collaboration Policy Solutions
lab01 Online Tools (Chapter 01 lab) 11:00am, Wednesday 23 January 2019 pair soln
lab02 SMS Tools (Chapter 02 lab) 11:00am, Monday, 28 January 2019 pair soln
lab03 String manipulation 11:50am, Wednesday, 30 January 2019 pair soln
lab04 Control structures 11:50am Monday, 4 February 2019
11:50am Wednesday, 6 February 2019
pair soln
lab05 Global Sequence Alignment 11:59pm Friday, 15 February 2018 pair
lab06 BLAST 11:59pm Wednesday, 20 February 2019 pair
lab07 Cladograms 11:50am Monday, 4 March 2019
11:59pm Tuesday, 5 March 2019
pair
lab08 Chronograms 11:50am Wednesday, 6 March 2019 pair
lab09 Circular chronograms 11:50am Friday, 8 March 2019 pair
lab10 Sequencing Technologies 11:59pm Wednesday, 3 April 2019 pair
lab11 Open Reading Frames 11:50am Friday, 12 April 2019 pair soln
lab12 Shine-Dalgarno Sequences 11:50am Monday, 15 April 2019 pair
lab13 Sorting by Reversals 11:59pm Monday, 29 April 2019 pair

Michael Goldwasser
CSCI 1020, Spring 2019
Last modified: Friday, 19 April 2019
Course Home | Assignments | Data Sets/Tools | Python | Schedule | Git Submission | Tutoring